latest
Contents:
Getting Started
API Documentation
LeafletFinder
Grouping methods
Classes
GraphMethod
SpectralClusteringMethod
Lipid APL
Lipid Depletion-Enrichment Index
Lipid Flip Flop
References
lipyds
API Documentation
Grouping methods
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Grouping methods
Classes
class
lipyds.leafletfinder.grouping.
GraphMethod
(
headgroups
:
AtomGroup
,
tailgroups
:
AtomGroup
|
None
=
None
,
cutoff
:
float
=
15.0
,
pbc
:
bool
=
False
,
sparse
:
bool
|
None
=
None
,
**
kwargs
)
[source]
class
lipyds.leafletfinder.grouping.
SpectralClusteringMethod
(
headgroups
:
AtomGroup
,
tailgroups
:
AtomGroup
|
None
=
None
,
cutoff
:
float
=
30.0
,
pbc
:
bool
=
False
,
n_leaflets
:
int
=
2
,
delta
:
float
|
None
=
20
,
cosine_threshold
:
float
=
0.8
,
angle_factor
:
float
=
1
,
**
kwargs
)
[source]
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